RnoEX0097241 @ rn6
Exon Skipping
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257595242-257601207:+
Coord C1 exon
chr2:257595242-257595350
Coord A exon
chr2:257599366-257599468
Coord C2 exon
chr2:257601139-257601207
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGACTTTTTCTCTCTGTAGCTC
3' ss Score
10.51
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATGGAGGAGGGCCTGCTGTCAACCACCTCTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAGATTGAAAAACGAAGAAAAACTGAATTGGAAATTTTTATTCGG
Seq A exon
CTCAACAGAGCATTTCAAGAGGAAGACTCTCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAG
Seq C2 exon
ATCCTCCAGGTCCAATAGACAACACTAAAATTGCAGTCACTAAGTGTGGTAATGTGATGCTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-'29-38,'29-36,32-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
PF063377=DUSP=PU(30.7=65.7)
C2:
PF063377=DUSP=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGTCAACCACCTCTAC
R:
GCTTGAGCATCACATTACCACAC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]