BtaEX6017042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70257567-70270098:+
Coord C1 exon
chr3:70257567-70257730
Coord A exon
chr3:70264130-70264181
Coord C2 exon
chr3:70269949-70270098
Length
52 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGCTTTCTTTTTCAGTGC
3' ss Score
12.89
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
AAAGGTGACAGAGTTTTCACTACCAGGACCATCTCTGGGGGCTATGCTGAGTATGCTCTGGCAGCCGATCACACTGTTTACACACTGCCAGAAAAGCTGGACTTTAAACAAGGAGCTGCCATCGGCATCCCATACTTTACTGCTTATCGAGCTCTGCTCCACAG
Seq A exon
TGCCTGTGTGAAACCTGGAGAAAGTGTTCTGGTTCATGGAGCTAGTGGAGGA
Seq C2 exon
GTTGGAATAGCAGCATGCCAAATTGCAAGAGCTTACGGCTTAAAGGTTTTGGGCACAGCTAGTACTGAGGAAGGACAAAAGATTGTTTTGGAAAATGGAGCCCACAAAGTGTTTAATCACAAAGAAGCTGACTATATTGATAAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162-'10-12,'10-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(36.5=100)
A:
PF082407=ADH_N=FE(11.5=100),PF0010721=ADH_zinc_N=PU(0.1=0.0)
C2:
PF082407=ADH_N=PD(14.2=42.0),PF0010721=ADH_zinc_N=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCCGATCACACTGTTTA
R:
CTTGCAATTTGGCATGCTGCT
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]