GgaEX6045236 @ galGal4
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28535160-28537361:-
Coord C1 exon
chr8:28537198-28537361
Coord A exon
chr8:28536507-28536558
Coord C2 exon
chr8:28535160-28535309
Length
52 bp
Sequences
Splice sites
3' ss Seq
TATGTCTTTTTTTTGTTCAGAGG
3' ss Score
8.23
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
AAAGGTGACAGGGTTTTTACCTCTGCTACGCTCTCTGGAGGATATGCAGATTATGCAGTTGCTGAAGCTGATACAGTCTTTCCTTTGTCGGACAAGTTGAGTTTCAGTCAAGGAGCAGCGATTGCAATACCCTACTTCACTGCTTACCGTGCTCTTTTCCTAAA
Seq A exon
AGGGCATGCCAAAGCAGGGGAAAGCGTGCTAATTCATGGTGCAAGTGGAGGC
Seq C2 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361-'11-10,'11-7,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(42.7=74.5)
A:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
C2:
PF0010721=ADH_zinc_N=FE(38.0=100)
Main Skipping Isoform:
ENSGALT00000018533fB6496
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCAGTCAAGGAGCAGCG
R:
CGTTCATACCCTGCTCGGTTC
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]