GgaEX6045236 @ galGal3
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
NA
Coordinates
chr8:30436680-30439016:-
Coord C1 exon
chr8:30438853-30439016
Coord A exon
chr8:30438027-30438078
Coord C2 exon
chr8:30436680-30436829
Length
52 bp
Sequences
Splice sites
3' ss Seq
TATGTCTTTTTTTTGTTCAGAGG
3' ss Score
8.23
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
AAAGGTGACAGGGTTTTTACCTCTGCTACGCTCTCTGGAGGATATGCAGATTATGCAGTTGCTGAAGCTGATACAGTCTTTCCTTTGTCGGACAAGTTGAGTTTCAGTCAAGGAGCAGCGATTGCAATACCCTACTTCACTGCTTACCGTGCTCTTTTCCTAAA
Seq A exon
AGGGCATGCCAAAGCAGGGGAAAGCGTGCTAATTCATGGTGCAAGTGGAGGC
Seq C2 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361-'7-6,'7-4,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(42.7=74.5)
A:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
C2:
PF0010721=ADH_zinc_N=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCAGTCAAGGAGCAGCG
R:
CGTTCATACCCTGCTCGGTTC
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]