RnoEX6012023 @ rn6
Exon Skipping
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260899801-260906711:+
Coord C1 exon
chr2:260899801-260899964
Coord A exon
chr2:260902260-260902311
Coord C2 exon
chr2:260906562-260906711
Length
52 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTCTTTTCCTGCAGTGC
3' ss Score
11.11
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AAGGGCGACCGGGTCTTCTGCTTTAGCACAGTCTCTGGTGGCTACGCAGAATTCGCTCTTTCGGCAGATAACACCACCTACCCCCTGCCCGAGACACTGGACTTCAGGCAGGGGGCTGCCCTGGGGATTCCGTACTTCACGGCCTGCCGAGCTCTGTTCCACAG
Seq A exon
TGCCCGTGCTCGAGCTGGGGAAAGCGTTCTTGTTCACGGGGCCAGCGGAGGA
Seq C2 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(47.6=90.9)
A:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
C2:
PF0010721=ADH_zinc_N=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGGATTCCGTACTTCA
R:
GCTCCGTTTTGCAGAACAAGC
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]