DreEX0024453 @ danRer10
Exon Skipping
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11329133-11334287:-
Coord C1 exon
chr2:11334124-11334287
Coord A exon
chr2:11331755-11331806
Coord C2 exon
chr2:11329133-11329282
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTTTCCTATACAGGGC
3' ss Score
10.45
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCAGGTGACAGAGTCTTTACCACAGGCACAGTGACAGGAGGATATGCTGAGTATACGGTGGCCTCAGAGGACACTGTTCACAAGCTGCCCGATTCCCTAAACTACTGTCAGGGTGCAGCAATGGGAGTTCCGTATTTCACTGCATACCGGGCTCTCGTTCACAA
Seq A exon
GGCCCATGCAAAACCAGGAGAAACCGTTCTTATCCATGGAGCCAGTGGTGGG
Seq C2 exon
GTAGGCATTGCAGCGTGTCAGATCGCACGAGCGTTTGGTCTTAAAGTCCTGGGTACAGCAGGTACTCCTGAAGGGATGAAGCTGGTGCTCAATAATGGAGCTCATCTTGCTTTCAACCACAGAGAAAAAGACTACTTGGAGAAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(16.7=20.0)
A:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
C2:
PF0010721=ADH_zinc_N=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAATGGGAGTTCCGTAT
R:
GCACCAGCTTCATCCCTTCAG
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]