MmuEX0012830 @ mm9
Exon Skipping
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154269343-154281573:+
Coord C1 exon
chr3:154269343-154269495
Coord A exon
chr3:154276786-154276837
Coord C2 exon
chr3:154281424-154281573
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTTTTTCCTGCAGTGC
3' ss Score
11.1
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTCCTAATCAAAGTCCACGCCTGCGGTGTCAACCCAGTAGAGACATACATTCGCTCTGGGGCCTACAGTCGAAAACCTGCCCTACCCTACACTCCAGGCTCTGATGTGGCTGGGATCATAGAATCCGTTGGAGACAAAGTGTCTGCTTTCAAG
Seq A exon
TGCCCGTGCTCGAGCTGGCGAAAGCGTTTTGGTTCATGGGGCCAGTGGAGGA
Seq C2 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(51.5=100)
A:
PF122423=Eno-Rase_NADH_b=FE(41.5=100)
C2:
PF122423=Eno-Rase_NADH_b=FE(29.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTACAGTCGAAAACCTG
R:
CCATGAGCTCTGGCAATCTGG
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: