BtaEX6019018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016328 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr3:111142855-111144350:+
Coord C1 exon
chr3:111142855-111143156
Coord A exon
chr3:111143258-111143353
Coord C2 exon
chr3:111144154-111144350
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGAACCATTTTTGTTGTTAGAAC
3' ss Score
2.28
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GAATCTAGAGCGTTGGCTGAAATAGCTAAAGCTGAACTTGATGATACACCCATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACACATGCTGCTGCCCTTTCTGTTCGAAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAGAAGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGTGGAAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAACCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCTTACTGACAAC
Seq A exon
AACTCCTCGTCCAGTCATTGTGGAACCACTTGAACAGTTAGATGATGAAGACGGTCTTCCTGAAAAACTTGCCCAGAAGAATCCAATGTATCAAAA
Seq C2 exon
GGAGAGAGAAACCCCTCCTCGTTTTGCCCAGCATGGGACATTTGAGTATGAGTATTCTCAGCGGTGGAAGTCCCTTGATGAAATGGAAAAACAGCAGCGGGAACAAGTTGAAAAAAACATGAAAGATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAGCATCAGGCAAATCTTTTGCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016328-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.758 C2=0.791
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=67.3)
A:
PF0007617=RRM_1=PD(0.1=0.0),PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTAGCCAGTTTGGTCCT
R:
GCAAAACGAGGAGGGGTTTCT
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]