RnoEX0080102 @ rn6
Exon Skipping
Gene
ENSRNOG00000058461 | Sfpq
Description
splicing factor proline and glutamine rich [Source:RGD Symbol;Acc:727923]
Coordinates
chr5:145081670-145084169:+
Coord C1 exon
chr5:145081670-145081971
Coord A exon
chr5:145082063-145082158
Coord C2 exon
chr5:145083973-145084169
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGAATCATTTGTGTTACTAGGAC
3' ss Score
5.43
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GAGTCAAGAGCCTTGGCTGAAATTGCCAAAGCTGAACTTGATGATACCCCCATGAGAGGTAGACAGCTACGGGTTCGGTTTGCCACACATGCTGCAGCCCTGTCTGTTCGGAATCTTTCTCCTTATGTATCCAATGAACTTTTGGAAGAGGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGTGGAAGATCCACGGGGAAAGGCATTGTTGAATTTGCTTCGAAGCCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCCTACTGACAAC
Seq A exon
GACTCCTCGCCCAGTCATTGTGGAACCACTTGAGCAGTTAGATGATGAAGATGGTCTTCCTGAAAAACTGGCCCAGAAGAATCCAATGTATCAAAA
Seq C2 exon
GGAGAGAGAAACGCCTCCTCGTTTTGCTCAGCATGGCACATTTGAGTATGAATATTCTCAACGATGGAAGTCTTTGGATGAAATGGAAAAACAGCAAAGGGAACAAGTTGAAAAAAACATGAAGGATGCAAAAGACAAGTTGGAAAGTGAAATGGAAGATGCCTACCATGAACACCAAGCAAATCTTTTGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058461-'13-19,'13-16,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.707 C2=0.723
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=67.3)
A:
PF0007617=RRM_1=PD(0.1=0.0),PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTAGCCAGTTTGGTCCT
R:
ACGAGGAGGCGTTTCTCTCTC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]