GgaEX1052123 @ galGal4
Exon Skipping
Gene
ENSGALG00000002514 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr23:4345251-4347124:+
Coord C1 exon
chr23:4345251-4345552
Coord A exon
chr23:4345673-4345768
Coord C2 exon
chr23:4346928-4347124
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTATTTTGTATTTAGCAC
3' ss Score
7.09
5' ss Seq
AAAGTAGGC
5' ss Score
5
Exon sequences
Seq C1 exon
GAGTCCAGAGCTCTGGCAGAAATCGCAAAGGCAGAACTGGACGACACCCCCATGCGGGGCCGACAGCTCCGTGTTCGGTTTGCAACGCACGCTGCCGCGCTGTCAGTGCGTAACCTTTCGCCTTACGTGTCCAACGAGTTACTGGAGGAGGCTTTCTCCCAGTTCGGTCCGGTGGAGAGAGCTGTTGTGATTGTAGATGATCGAGGTAGATCAACAGGAAAAGGCATTGTTGAATTTGCATCAAAGCCAGCTGCCAGAAAAGCGTTTGAACGATGTACTGAGGGAGTGTTCTTGTTGACAAC
Seq A exon
CACTCCTAGGCCAGTTATTGTGGAACCTTTGGAGCAACTGGATGATGAAGATGGTCTTCCAGAAAAGCTTGCTCAGAAGAACCCGATGTATCAAAA
Seq C2 exon
GGAAAGAGAAACTCCTCCCCGTTTTGCTCAGCCTGGCAGTTTTGAGTTTGAGTATTCCCAGAGATGGAAATCTTTAGATGAAATGGAAAAACAACAGAGAGAACAAGTGGCAAAAAACATGAAAGATGCCAAGGACAAACTTGAGAGTGAGATGGAAGATGCTTATCATGAGCATCAGGCAAACCTTTTGCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002514_MULTIEX1-3/10=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.758 C2=0.821
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=66.3)
A:
PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGAGAGAGCTGTTGTGA
R:
ACTCAAAACTGCCAGGCTGAG
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]