DreEX0065687 @ danRer10
Exon Skipping
Gene
ENSDARG00000011564 | sfpq
Description
splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
Coordinates
chr19:40440463-40443691:+
Coord C1 exon
chr19:40440463-40440764
Coord A exon
chr19:40440857-40440952
Coord C2 exon
chr19:40443495-40443691
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACTATTGATTACCTTTTAGGTC
3' ss Score
7.52
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAATCCCGTGCCTTGGCAGAGGTTGCGAAAGCAGAGTTGGATGATACTCCAATGAAAGGCAGACCACTCCGAGTTCGCTTCGCTACTCATTCTGCTGCACTTTCTGTGCGAAATCTATCTCCGTTCGTGTCCAATGAGCTGCTGGAGGAGGCATTCTCTCAGTTTGGACTGGTGGAAAGGGCTATAGTCATCGTGGATGACCGTGGACGCTCAACAGGGAAAGGCATTGTTGAGTTTTCTTCTAAGCCAGCTGCCCGCAAGGCCATGGATCGCATTAGTGATGGGGTGTTCCTTCTCACATC
Seq A exon
GTCCCCCCGTCCAATTGTGGTTGAATTGTTGGAGCAGTATGATGACGAGGACGGTTTGCCCGAGAAGCTTGCACAGAAAAACCCCAGTTATCAAAA
Seq C2 exon
GGAACGAGAGCAACCTCCTCGGTTTGCCCGTCCTGGCACCTTTGAGTATGAATACTCCCAGCGATGGAAGTCCCTTGATGAGATGGAGAAACAGCAGAGGCAGCAAGTGGAGAAAAACATCTGTGAAGCCCGTGAGAAGCTGGAAACGGAGATGGACGATGCATATCATGAGCATCAAGCGAACATGCTCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011564-'6-4,'6-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.504 C2=0.791
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=63.4)
A:
PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTCTAAGCCAGCTGCCC
R:
TTGCTGCCTCTGCTGTTTCTC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]