MmuEX0041954 @ mm10
Exon Skipping
Gene
ENSMUSG00000028820 | Sfpq
Description
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
Coordinates
chr4:127023267-127026051:+
Coord C1 exon
chr4:127023267-127023568
Coord A exon
chr4:127023674-127023760
Coord C2 exon
chr4:127025855-127026051
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGAATAATTTCTGTTACTAGGAC
3' ss Score
5.96
5' ss Seq
AATGTATCA
5' ss Score
-0.05
Exon sequences
Seq C1 exon
GAATCTAGAGCCTTGGCTGAAATCGCCAAAGCTGAGCTTGATGATACTCCCATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACACACGCTGCAGCCCTGTCTGTTCGAAATCTCTCTCCTTATGTTTCCAACGAACTTTTGGAAGAGGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGCGGAAGATCTACAGGGAAAGGCATTGTTGAGTTTGCTTCCAAGCCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCCTACTGACAAC
Seq A exon
GACTCCTCGCCCAGTCATTGTGGAACCACTTGAACAGTTAGATGACGAAGATGGTCTTCCTGAAAAGCTGGCCCAGAAGAATCCAAT
Seq C2 exon
GGAGAGAGAAACACCACCTCGTTTTGCTCAGCATGGCACATTTGAGTATGAATATTCTCAACGATGGAAGTCCTTGGATGAAATGGAAAAACAGCAAAGGGAACAAGTTGAAAAAAACATGAAGGATGCTAAAGACAAATTGGAAAGTGAAATGGAAGATGCTTACCATGAACACCAAGCAAATCTTTTGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028820-'5-11,'5-10,6-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.758 C2=0.791
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=67.3)
A:
PF0007617=RRM_1=PD(0.1=0.0),PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTAGCCAGTTTGGTCCT
R:
CTGAGCAAAACGAGGTGGTGT
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types