HsaEX6029927 @ hg19
Exon Skipping
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]
Coordinates
chr1:35654787-35656596:-
Coord C1 exon
chr1:35656295-35656596
Coord A exon
chr1:35656099-35656194
Coord C2 exon
chr1:35654787-35654983
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGAACCATTTTTGTTATTAGAAC
3' ss Score
3.32
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GAATCTAGAGCTTTGGCTGAAATTGCCAAAGCCGAACTGGATGATACACCCATGAGAGGTAGACAGCTTCGAGTTCGCTTTGCCACACATGCTGCTGCCCTTTCTGTTCGTAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAGAAGCCTTTAGCCAATTTGGTCCTATTGAAAGGGCTGTTGTAATAGTGGATGATCGTGGAAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAGCCAGCAGCAAGAAAGGCATTTGAACGATGCAGTGAAGGTGTTTTCTTACTGACGAC
Seq A exon
AACTCCTCGTCCAGTCATTGTGGAACCACTTGAACAACTAGATGATGAAGATGGTCTTCCTGAAAAACTTGCCCAGAAGAATCCAATGTATCAAAA
Seq C2 exon
GGAGAGAGAAACCCCTCCTCGTTTTGCCCAGCATGGCACGTTTGAGTACGAATATTCTCAGCGATGGAAGTCTTTGGATGAAATGGAAAAACAGCAAAGGGAACAAGTTGAAAAAAACATGAAAGATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTTTGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.841 C2=0.881
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=67.3)
A:
PF0007617=RRM_1=PD(0.1=0.0),PF080756=NOPS=PU(53.8=84.8)
C2:
PF080756=NOPS=PD(44.2=34.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTTAGCCAATTTGGTCCT
R:
GCAAAACGAGGAGGGGTTTCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)