BtaEX6019059 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112808690-112820883:+
Coord C1 exon
chr3:112808690-112808835
Coord A exon
chr3:112820189-112820269
Coord C2 exon
chr3:112820770-112820883
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTCTTGTCTTTTCAGCTT
3' ss Score
11.04
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GGATGGGCCACAGAAGACAGCCCCACAGCTTGGAGCCTTCAGCCGGAGCTTTGCCAAGAAGACAATGTACAGCTCATCCAACCAGGTGCTGCTCCAGTTCCACCACGAGTCAGCCATGGGCGGGATCTTCGCCATAGCTTTCTCTG
Seq A exon
CTTATCCACTCACCAAATGCCCTCCTCCCACCATCCTCCCCAATGCTGAAGTTGTCACAGAGAATGAAGAATTCAACATAG
Seq C2 exon
GTGACATCGTACGCTACCGGTGCCTCCCTGGATTTACCTTAGTGGGGAATGAAATCCTGACCTGCAAACTTGGAACTTACCTGCAGTTTGAAGGGCCGCCCCCAATATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'61-60,'61-59,62-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTTGCCAAGAAGACA
R:
GTTCCAAGTTTGCAGGTCAGGA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]