RnoEX6023420 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146672404-146682930:+
Coord C1 exon
chr5:146672404-146672549
Coord A exon
chr5:146682313-146682393
Coord C2 exon
chr5:146682817-146682930
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTCTGTCTTTCTAGCTT
3' ss Score
10.65
5' ss Seq
TAGGTACCA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GGATGGGCCACAGCAGACATCACTGCAGCTTGGGGTCTTTACAAGGAGTCTGTCCAAGAAAATAGCATACAGCTCCTCTAACCAGGTCCTGCTCAAGTTCCATCGGGACACGGCCACAGGTGGGATCTTCGCCATTGCCTTCACAG
Seq A exon
CTTATCCACTCACCAAGTGTCCTCCCCCGACCATCCTTCCCAATGCTGAAGTGGTCACAGAGAACGAAGAATTCAACATAG
Seq C2 exon
GTGACATCGTCCGCTACAGGTGCCTTCCAGGCTTTACCTTAGTGGGGAGTGAAATCCTCACCTGCAAGCTGGGAACCTACCTGCAGTTCGAAGGCCCACCCCCAATATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'50-62,'50-61,53-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGTTCCATCGGGACACG
R:
CTTCACATATTGGGGGTGGGC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]