Special

HsaEX6029875 @ hg19

Exon Skipping

Gene
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:19290]
Coordinates
chr1:34052104-34066610:-
Coord C1 exon
chr1:34066465-34066610
Coord A exon
chr1:34052688-34052768
Coord C2 exon
chr1:34052104-34052217
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTTTTATCTTTTCAGCTT
3' ss Score
10.22
5' ss Seq
TAGGTACCA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GGATGGGCCACAGCAAACAGCACCACGGCTCGGCGTCTTCACCCGGAGCATGGCCAAGAAAACAGTGCAGAGTTCATCCAACCAGGTCCTGCTCAAGTTCCACCGTGATGCAGCCACAGGGGGGATCTTCGCCATAGCTTTCTCCG
Seq A exon
CTTATCCACTCACCAAATGCCCTCCTCCCACCATCCTCCCCAACGCCGAAGTCGTCACAGAGAATGAAGAATTCAATATAG
Seq C2 exon
GTGACATCGTACGCTACAGATGCCTCCCTGGCTTTACCTTAGTGGGGAATGAAATTCTGACCTGCAAACTTGGAACCTACCTGCAGTTTGAAGGACCACCCCCGATATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121904-'52-57,'52-56,56-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCCTGCTCAAGTTCCAC
R:
TATCGGGGGTGGTCCTTCAAA
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains