DreEX6074425 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44717871-44733678:-
Coord C1 exon
chr19:44733533-44733678
Coord A exon
chr19:44721228-44721308
Coord C2 exon
chr19:44717871-44717984
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTTTCTTTTGCAGCCT
3' ss Score
12.46
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGATGGTCCAGACCAGAGTTCGCCTCAGATCGGTCAGTTCAGCGGAAACACAGCGCTGGAGTCTGTCTACAGCACATCCAACCAGATCCTCATCAAGTTCCACAGTGACTTCAGTGGAAGTGGCTTCTTTGTGCTGAGTTACCATG
Seq A exon
CCTACCAGTTACGAGTGTGCCAGCCTCCCCTGGAGGTGGCAAATGCTGATATCCTGATGGAGGACAATGAGTTAGAAATAG
Seq C2 exon
GTGATATCATCCGCTATCGATGCCACCCTGGATTCACCCTGGTGGGGAGCGAGATTTTGACGTGCAGGTTAGGAGAACGGCTACAGATGGACGGACACCCCCCATCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.2=93.9)
A:
PF0008415=Sushi=PU(34.5=71.4)
C2:
PF0008415=Sushi=PD(63.8=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTCAGTTCAGCGGAAAC
R:
GTCAAAATCTCGCTCCCCACC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]