RnoEX6032202 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86772781-86798278:-
Coord C1 exon
chr7:86798133-86798278
Coord A exon
chr7:86773440-86773520
Coord C2 exon
chr7:86772781-86772894
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGGTATGCTTAAATTTTTAGCCT
3' ss Score
4.88
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGATGGACCTGACCAAAATTCACCCCAAATTGGTCAATTCAGTGGCAATACTGCTTTGGAATCAGTATACAGCACTTCAAATCAAATTCTAATCAAATTCCACAGTGACTTCACAACAAGTGGCTTTTTTGTGCTCAGTTATCATG
Seq A exon
CCTACCAGCTAAGAGTGTGCCAGCCTCCACCACCTGTCCCTAATGCAGAAATTCTGACAGAAGATGATGAGTTTGAAATAG
Seq C2 exon
GCGATATTATCAGATATCAGTGTCTTCCAGGGTTTACCTTGGTCGGCAATGCAATTCTGACATGCAGATTGGGAGAGCGACTGCAGATGGATGGGGCACCTCCAGTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'50-58,'50-57,51-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAATTGGTCAATTCAGTGGC
R:
ATTGCCGACCAAGGTAAACCC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]