BtaEX6062822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54292851-54323537:+
Coord C1 exon
chr14:54292851-54292996
Coord A exon
chr14:54322396-54322476
Coord C2 exon
chr14:54323424-54323537
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCATTATCTATTTTTACAGCCT
3' ss Score
5.94
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGATGGACCAGACCAAAACTCACCACAGATTGGACAGTTCAGTGGCAATACTGCTTTGGAATCAGTCTACAGCACTTCCAATCAGATTCTAATCAAATTCCACAGTGATTTCACAACAAGTGGCTTTTTTGTGCTCAGTTATCATG
Seq A exon
CCTATCAACTAAGAGTGTGTCAACCTCCACCACCCGTACCCAATGCTGAAATTTTGACAGAAGATGATGAATTTGAAATAG
Seq C2 exon
GTGATATTATTAGATATCAGTGTCTTCCAGGATTTACTTTGGTTGGTAATGCAATTCTGACCTGCAGATTAGGAGAACGACTCCAGATGGATGGAGCACCTCCCGTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.071 C2=0.051
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCAGTGGCAATACTGC
R:
TGCAGGTCAGAATTGCATTACCA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]