HsaEX6082005 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113331066-113347703:-
Coord C1 exon
chr8:113347558-113347703
Coord A exon
chr8:113332130-113332210
Coord C2 exon
chr8:113331066-113331179
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTTTGTTTATTTTTGTAGCCT
3' ss Score
7.07
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGATGGACCAGACCAAAATTCACCTCAGATCGGTCAGTTCAGTGGCAATACCGCTTTGGAATCAGTCTACAGTACTTCAAATCAGATTCTAATCAAATTCCACAGTGATTTCACAACAAGTGGCTTTTTTGTGCTCAGTTATCACG
Seq A exon
CCTATCAACTAAGGGTGTGCCAACCTCCACCACCTGTGCCCAATGCTGAAATTTTGACGGAAGATGATGAATTTGAAATAG
Seq C2 exon
GTGATATTATTAGGTATCAGTGTCTTCCAGGATTTACTTTAGTTGGTAATGCAATTCTGACGTGCAGATTAGGAGAACGACTGCAGATGGATGGAGCACCTCCAGTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATACCGCTTTGGAATCA
R:
CGTTCTCCTAATCTGCACGTCA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)