DreEX6042869 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47769716-47781688:-
Coord C1 exon
chr16:47781543-47781688
Coord A exon
chr16:47772362-47772442
Coord C2 exon
chr16:47769716-47769829
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTCCCATGTCGCAGCTT
3' ss Score
7.71
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GGACGGCCCTGACCAAACGTCTCCGCAGATCGGTCAGTTCAGCGGAAGTTTGCCTCAAGAGCCTGTTTCAAGCACATCCAATCACATCTTGTTGAAGTTTCATAGCGACTTCAGCACCAGCGGATTCTTTGTTCTTCGTTATCATG
Seq A exon
CTTACCAACTCCGTGTCTGTCAGCCTCCTCCACCGGTCGCCAACGCAGAGATCCTGGCTGAAGATGACGAATTCCAGATCG
Seq C2 exon
GAGACATCATCAGGTACCGCTGCCTGCCGGGCTTCACGCTGCTGGGGAGCGAGATCTTGACCTGTCGGCTGGGCGAGCGGCTGCAGATGGATGGTCCTCCCCCAGTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'46-46,'46-45,47-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=95.9)
A:
PF0008415=Sushi=PU(34.5=71.4)
C2:
PF0008415=Sushi=PD(63.8=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAAGTTTGCCTCAAGAG
R:
CGACAGGTCAAGATCTCGCTC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]