GgaEX6022130 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139052306-139056600:-
Coord C1 exon
chr2:139056455-139056600
Coord A exon
chr2:139053600-139053680
Coord C2 exon
chr2:139052306-139052419
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTATATTTCTCTTTATAGCCT
3' ss Score
9.17
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
GGATGGACCAGACCAAACTTCTCCTCAAATTGGGCAGTTTAGTGGCAATACTGCACTAGAATCAGTCTACAGTACTTCCAATCAGATTCTGATCAAGTTTCACAGTGACTTTACTACTAGTGGCTTTTTTGTACTTAGTTATCATG
Seq A exon
CCTATCAGCTTCGAGTTTGCCAGCCTCCAACAAGCATACCAAATGCTGAAATTCTAACTGAAGATGACGAGTTTGAAATAG
Seq C2 exon
GAGACATAATAAGGTACCAGTGTCAACCAGGCTTTACATTGGTTGGTAATGAGATTCTGACATGCCGACTGGGTGAAAGGCTTCAGATGGATGGAGCACCACCTACTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCAGACCAAACTTCTCCT
R:
AAGCCTGGTTGACACTGGTAC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]