MmuEX6053525 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47675713-47695846:-
Coord C1 exon
chr15:47695701-47695846
Coord A exon
chr15:47676402-47676482
Coord C2 exon
chr15:47675713-47675826
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTATTTGTTTTTCTTTTTAGCTT
3' ss Score
10.38
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGATGGACCTGACCAAAATTCACCCCAAATTGGTCAATTCAGTGGCAATACTGCTTTGGAATCAGTATACAGCACTTCAAATCAAATTCTAATCAAATTCCACAGTGACTTCACAACAAGTGGCTTTTTTGTGCTCAGTTATCATG
Seq A exon
CTTACCAACTGAGAGTGTGCCAACCTCCACCACCTGTCCCTAATGCAGAAATCCTGACAGAAGATGATGAGTTTGAAATAG
Seq C2 exon
GCGATATTATCAGATATCAGTGTCTTCCAGGGTTTACACTGGTTGGCAATGCAATTCTGACATGCAGATTGGGAGAGCGACTGCAGATGGATGGGGCACCTCCAGTGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'94-63,'94-62,95-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAATTGGTCAATTCAGTGGC
R:
TGCCAACCAGTGTAAACCCTG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types