GgaEX6025159 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5128418-5132703:+
Coord C1 exon
chr23:5128418-5128563
Coord A exon
chr23:5132146-5132226
Coord C2 exon
chr23:5132587-5132703
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCACTGTCTTTTCAGCCT
3' ss Score
8.72
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GGATGGTCCACAACAAACAGCCCCGCAGCTTGGAGTATTCACTGGCAACTCTGCTAAGAAGTCAGCCCAAAGCTCTTCCAATCAGGTCCTGGTGAAATTCCACAGCGATGCTGCAAATGGAGGGATTTTTGCCATTTACTTCTATG
Seq A exon
CCTACCAGCTCTTCAGGTGTCAGCCTCCGACCATGGTTCCCAACGCAGAAATCATCACTGAGAATGAGGAGTTTAACATAG
Seq C2 exon
CAGGAGACATTGTGAGGTACAGATGCCTTCCTGGCTTTACACTGATTGGAAATGAAATCCTGACCTGCAAACTAGGCACTCACCTGCAGTTTGAAGGCCCTCCGCCCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'52-53,'52-52,53-53=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(35.6=75.0)
C2:
PF0008415=Sushi=PD(62.7=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCCAATCAGGTCCTGG
R:
GCCTTCAAACTGCAGGTGAGT
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]