BtaEX6019870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9941023-9946533:+
Coord C1 exon
chr5:9941023-9941127
Coord A exon
chr5:9941213-9941253
Coord C2 exon
chr5:9946470-9946533
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGTTGATTTTTGCCTTTTAGAAT
3' ss Score
9.71
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGTGTGAGCCAAATCTTTGTCCTATGCCTCTATTCAACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGTCCAACATGGCATTGTG
Seq A exon
AATGTAGCTGTGAAAATCTTGTTATGCCATCTTGTGAAGTG
Seq C2 exon
GGAGAATTTACTGCAATAGACTACAACTTTCAGAGTGACTGTGGATGTGTACAGTATCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'54-55,'54-53,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCTATTCAACTGTGCAGA
R:
ACACATCCACAGTCACTCTGA
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]