GgaEX6001396 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39768897-39769547:+
Coord C1 exon
chr1:39768897-39769001
Coord A exon
chr1:39769089-39769129
Coord C2 exon
chr1:39769484-39769547
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTCTCTTCGCAGAAT
3' ss Score
11.94
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTGTGATGAAAATTTTTGTCCTGAGCCTCCTATGAATTGCACAGATGACATGATGGTTGTGAAGGAAAAAGTACCTGGGCAGTGTTGTCCAGAATGGCACTGTG
Seq A exon
AATGTAGTTGTGAAAATATTACTACAAGGACTTGCAAATTG
Seq C2 exon
GGAGAAGTTCAAAAAATAGATAGTAGTATTTCCAGTGCTTGTGGATGCACTCACTACATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCCTCCTATGAATTGCA
R:
TGAGTGCATCCACAAGCACTG
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]