GgaEX6001396 @ galGal3
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
NA
Coordinates
chr1:41720562-41721212:+
Coord C1 exon
chr1:41720562-41720666
Coord A exon
chr1:41720754-41720794
Coord C2 exon
chr1:41721149-41721212
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTCTCTTCGCAGAAT
3' ss Score
11.94
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTGTGATGAAAATTTTTGTCCTGAGCCTCCTATGAATTGCACAGATGACATGATGGTTGTGAAGGAAAAAGTACCTGGGCAGTGTTGTCCAGAATGGCACTGTG
Seq A exon
AATGTAGTTGTGAAAATATTACTACAAGGACTTGCAAATTG
Seq C2 exon
GGAGAAGTTCAAAAAATAGATAGTAGTATTTCCAGTGCTTGTGGATGCACTCACTACATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'58-64,'58-63,59-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCCTCCTATGAATTGCA
R:
TGAGTGCATCCACAAGCACTG
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]