HsaEX6068024 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80752451-80760417:+
Coord C1 exon
chr12:80752451-80752555
Coord A exon
chr12:80752640-80752680
Coord C2 exon
chr12:80760354-80760417
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGTTGATTTTTGCCTTTTAGAAT
3' ss Score
9.71
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TATGTGAACCAAACCTTTGTCCTATGCCATTACTCAACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGCCCAACATGGCACTGTG
Seq A exon
AATGTAACTGTGAAAACCTTATTATGCCAACTTGTGAAGTG
Seq C2 exon
GGAGAATTTACTGCAATAGACCATAACTTCCAGAGTGATTGTGGATGCATACAGTATCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'40-44,'40-43,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACCTTTGTCCTATGCCA
R:
TGCATCCACAATCACTCTGGA
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)