DreEX6063904 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6099278-6102287:+
Coord C1 exon
chr18:6099278-6099382
Coord A exon
chr18:6102066-6102106
Coord C2 exon
chr18:6102224-6102287
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGGATTCTTTATAGAAT
3' ss Score
7.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGTGTGATATGAGTCTGTGTCCTGAGCCCAGTGTGAGTTGTGCTCCTGGAGCTGTGCTGATAAAGAGACCCGTGCCGGACAGCTGCTGTCCAGAAACACACTGCG
Seq A exon
AATGTCAGTGTCACAATCTTACGCTTCCGGCCTGCACCATG
Seq C2 exon
GGTGAAGTGAGAGTGGAGGAACCAGACCCCGGCGGCCCCTGTGGATGCCCACTGTATCACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGTTGTGCTCCTGGAG
R:
GCAGTGATACAGTGGGCATCC
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]