MmuEX6051188 @ mm10
Exon Skipping
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107772266-107777312:-
Coord C1 exon
chr10:107777208-107777312
Coord A exon
chr10:107777081-107777121
Coord C2 exon
chr10:107772266-107772329
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTCTGCCCTTCTAGAAT
3' ss Score
8.86
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TTTGTGAGCCAGATCTTTGCCCTCCACCATCACTTGAGTGTGCAAAAGATATGAACCTGGTGAAAGAAAATGTATCTGGACAATGTTGCCCAAACTGGCGTTGCG
Seq A exon
AATGCAACTGTGAGACTCTTGTCATGCCAACCTGTGACGTG
Seq C2 exon
GGAGAATTTGCTGCAATAGATCAAAACTTTCAGACTGACTGTGGCTGTGTACAGTATCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCCTCCACCATCACTTG
R:
ACACAGCCACAGTCAGTCTGA
Band lengths:
140-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types