BtaEX6020297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26661046-26664929:+
Coord C1 exon
chr5:26661046-26661159
Coord A exon
chr5:26661738-26661890
Coord C2 exon
chr5:26664732-26664929
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATCTTTTACCACAGAGA
3' ss Score
8.56
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGCCAGACCTGTGTCTATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGCAGTGGTTCCATTTCTCCCTCTGGCCACCCTATGCCATCAGAAGCCAAGATG
Seq A exon
AGACTAAAAGCTACCCTAACCCACCAAGTCTCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGGACTGCCAGCACCATGGTGACAGCCCGTCCAGAGCAAAGCCAGATCCTCATCCAGCACCCTGACGCCCCATCCCCGGCCCAGCCACAG
Seq C2 exon
GTCTCACCAGCCCAACCCACTCCTAGTACTGGAGGTCGACGTCGGCGCACGGTTGATGAAGATCCAGATGAGCGGCGACAGCGCTTTCTGGAGCGCAACCGGGCTGCAGCCTCCCGCTGCCGTCAAAAGCGGAAGCTGTGGGTGTCCTCCCTAGAGAAGAAGGCTGAGGAACTCACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863-'16-12,'16-11,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=0.941 C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTCTATGGTGCCCAAC
R:
CCCACAGCTTCCGCTTTTGA
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]