GgaEX6047968 @ galGal3
Exon Skipping
Gene
ENSGALG00000003038 | ATF7
Description
NA
Coordinates
chrUn_random:38352463-38354456:+
Coord C1 exon
chrUn_random:38352463-38352576
Coord A exon
chrUn_random:38353378-38353524
Coord C2 exon
chrUn_random:38354259-38354456
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTCTCCTGTGGCAGAGG
3' ss Score
7.19
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTGGCCCGGCCCGTCTCCATCGTGCCCAACATTCCCGGCATCCCCGGGCCGCCCAGCAGCAGCAGCGGCTCCGTTTCCCCTCCGGGTCTCCCCGTGCACTCGGAAGCCAAAATG
Seq A exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
Seq C2 exon
GTTTCCCCTGCCCAACCCACCCCCAGCACCGGCGGCCGGCGGAGGCGGACGGTGGATGAGGACCCCGATGAGCGCCGGCAGCGGTTCCTGGAGCGGAACAGAGCTGCTGCCTCACGCTGCCGGCAGAAACGCAAGCTGTGGGTGTCCTCCTTGGAGAAGAAAGCCGAGGAGCTCACAACGCAGAACATCCAGCTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038-'6-8,'6-6,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.980 C2=0.697
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCGTGCCCAACATTCC
R:
TTCTCCAAGGAGGACACCCAC
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]