MmuEX6056874 @ mm9
Exon Skipping
Gene
ENSMUSG00000052414 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102371171-102377698:-
Coord C1 exon
chr15:102377585-102377698
Coord A exon
chr15:102376836-102376988
Coord C2 exon
chr15:102371171-102371368
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAAATAATCTTTCCACATAGAGA
3' ss Score
6.33
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
Seq A exon
AGACTAAAAGCCACGCTGACCCATCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTGGGTACTGCAAGCACCATGGTGACTGCCCGTCCAGAGCAAAACCAGATCCTCATCCAGCACCCAGATGCCCCATCCCCTGCCCAGCCACAG
Seq C2 exon
GTCTCTCCAGCTCAGCCCACCCCTAGCACTGGGGGACGGCGACGGCGTACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGGTTTTTAGAGCGAAACAGAGCTGCAGCCTCTCGATGCCGGCAAAAGCGGAAACTGTGGGTGTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052414-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.941 C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCATGGTGCCCAACATTC
R:
ACACCCACAGTTTCCGCTTTT
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: