MmuEX6056874 @ mm10
Exon Skipping
Gene
ENSMUSG00000099083 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102540740-102547267:-
Coord C1 exon
chr15:102547154-102547267
Coord A exon
chr15:102546405-102546557
Coord C2 exon
chr15:102540740-102540937
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAAATAATCTTTCCACATAGAGA
3' ss Score
6.33
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
Seq A exon
AGACTAAAAGCCACGCTGACCCATCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTGGGTACTGCAAGCACCATGGTGACTGCCCGTCCAGAGCAAAACCAGATCCTCATCCAGCACCCAGATGCCCCATCCCCTGCCCAGCCACAG
Seq C2 exon
GTCTCTCCAGCTCAGCCCACCCCTAGCACTGGGGGACGGCGACGGCGTACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGGTTTTTAGAGCGAAACAGAGCTGCAGCCTCTCGATGCCGGCAAAAGCGGAAACTGTGGGTGTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099083-'14-19,'14-18,15-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.941 C2=0.694
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCATGGTGCCCAACATTC
R:
ACACCCACAGTTTCCGCTTTT
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types