DreEX6081107 @ danRer10
Exon Skipping
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27526270-27529329:-
Coord C1 exon
chr23:27529210-27529329
Coord A exon
chr23:27528485-27528634
Coord C2 exon
chr23:27526270-27526458
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTTGTTATTCTCAGAGG
3' ss Score
8.27
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTGGCAAGGCCCTTGTGTATGGTGCCCAACATTCCAGGCATCCCCGGGCCTCCACTAGGGGGCAGCAGCAGCGGTTCGTCTTCACCCTCCGGTTACAACCCTCATGCTGAGGCAAAGATG
Seq A exon
AGGTTGAAAGCAGCATTATCTCAGCAGACATCCTCCGCTCAGGGTTGTCTTGGTGTGGCGATGGGCTCTAGTGCAATGGTGCCTCAGAGGGTGGAGCAAAGCCAGCTGCTGGTTCAGCATCCAGATGCTCCATCACCTGCTCAGCCACAG
Seq C2 exon
GTGTCTCCCGCTCAGCCCACCGGGGGTCGCAGGCGGAGGACGGCTGATGATGACCCCGATGAGAGGAGGCAACGCTTTCTGGAGCGCAACAGGGCAGCGGCTTCACGTTGCAGGCAGAAACGCAAGATATGGGTGAACTCTCTGGAGAAAAAAGCTGAGGAGCTCACCTCCATCAACGTCTCGCTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=0.927 C2=0.687
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGTATGGTGCCCAACA
R:
CCCATATCTTGCGTTTCTGCCT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]