RnoEX6034339 @ rn6
Exon Skipping
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144144220-144147107:-
Coord C1 exon
chr7:144146994-144147107
Coord A exon
chr7:144146239-144146391
Coord C2 exon
chr7:144144220-144144417
Length
153 bp
Sequences
Splice sites
3' ss Seq
TATATAATCTTTCCACACAGAGA
3' ss Score
7.66
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGCCAGACCTGTTTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCAGTTAACAATAGTGGCTCTATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
Seq A exon
AGACTAAAAGCCACATTGACCCACCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTAGGCACTGCAAGCACCATGGTGACAGCCCGTCCAGAGCAGAACCAGATCCTCATCCAGCACCCGGATGCCCCATCCCCTGCCCAGCCACAG
Seq C2 exon
GTGTCTCCAGCTCAGCCCACCCCTAGCACAGGGGGACGGCGTCGGCGCACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGATTTTTAGAGCGGAACAGAGCTGCAGCCTCCCGATGCCGCCAAAAGCGAAAGCTGTGGGTCTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.941 C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGGTGCCCAACATTCC
R:
GAGACCCACAGCTTTCGCTTT
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]