BtaEX6020863 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30458020-30459083:-
Coord C1 exon
chr5:30458840-30459083
Coord A exon
chr5:30458313-30458470
Coord C2 exon
chr5:30458020-30458227
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCTGACTTCCCACAGATA
3' ss Score
10.66
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGGGTGTTTGGGGAGAAGCCAAATCTGCCTGAGTACAAGGTAGCCGCCATCCGGAAGTCGCCCTTCATCCTGCTGCACTGTGGGGCGCTGAGGGCCACTTGGGATGGCTTCATCCTGCTGGCCACCCTCTACGTGGCTGTCACCGTGCCCTACAGCGTGTGCGTGAGCACAGCCCGGGAGCCCAGTGCCGCCCGTGGCCCCCCCAGTGTCTGCGACCTGGCCGTGGAGGTCCTCTTCATTCTCG
Seq A exon
ATATTGTGCTGAATTTCCGTACCACGTTCGTGTCCAAGTCAGGCCAGGTGGTGTTTGCCCCCAAGTCCATTTGCCTCCACTACGTTACCACGTGGTTCCTGTTGGATGTCATTGCAGCGCTGCCCTTTGACCTGCTGCACGCCTTCAAGGTCAATGTG
Seq C2 exon
TACTTCGGGGCGCACCTGCTGAAGACAGTGCGACTCCTGCGGCTGCTTCGCCTGCTCCCCCGGCTGGACCGCTACTCGCAGTACAGCGCCGTGGTGCTGACCCTGCTCATGGCCGTGTTTGCCCTGCTCGCCCACTGGGTGGCCTGCGTCTGGTTCTACATTGGCCAGCGGGAAATTGAGAGCAGCGCCTCGGAGCTGCCCGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-'5-10,'5-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.0=14.6)
A:
PF0052026=Ion_trans=FE(21.8=100)
C2:
PF0052026=Ion_trans=FE(28.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTACAAGGTAGCCGCCAT
R:
GAGTCGCACTGTCTTCAGCAG
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]