MmuEX0025039 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99058904-99059944:+
Coord C1 exon
chr15:99058904-99059147
Coord A exon
chr15:99059490-99059647
Coord C2 exon
chr15:99059737-99059944
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTATTTTCCACACAGATA
3' ss Score
9.57
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGAGTGTTTGGAGAGAAGCCAAATTTGCCTGAATATAAAGTCGCTGCTATCCGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTTGCCACACTCTACGTGGCAGTCACTGTGCCATACAGTGTGTGTGTGAGCACAGCACGGGAACCCAGTGCTGCCCGTGGCCCACCTAGTGTCTGTGACCTGGCTGTGGAGGTCCTCTTCATCTTAG
Seq A exon
ATATTGTGCTGAATTTTCGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTTGCCCCAAAGTCCATTTGCCTCCACTACGTCACCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAACGTG
Seq C2 exon
TACGTTGGGGCTCACCTCCTGAAGACCGTGCGACTGCTGCGCCTGCTGCGCCTGCTGCCAAGACTGGACCGGTACTCACAGTACAGCGCGGTTGTGCTCACCTTGCTCATGGCTGTCTTCGCCCTGCTCGCTCACTGGGTGGCCTGCGTCTGGTTTTACATCGGCCAGCAAGAGATTGAGAGCAGCGAGTCGGAGCTGCCTGAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(4.8=14.6)
A:
PF0052026=Ion_trans=FE(20.9=100)
C2:
PF0052026=Ion_trans=FE(27.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCCTGCTTGCCACACT
R:
CCATGAGCAAGGTGAGCACAA
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: