RnoEX0046031 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140896184-140900602:+
Coord C1 exon
chr7:140896184-140896427
Coord A exon
chr7:140896819-140896976
Coord C2 exon
chr7:140900315-140900602
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGCCTATTTTCCCACACAGATA
3' ss Score
9.46
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGTGTGTTTGGAGAGAAGCCAAATTTGCCCGAATATAAAGTCGCTGCTATCCGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTCGCCACGCTCTACGTGGCTGTCACTGTGCCATACAGCGTGTGTGTGAGCACAGCACGGGAGCCCAGTGCTGCCCGTGGCCCACCTAGTGTCTGTGACCTGGCCGTGGAAGTCCTCTTCATCTTAG
Seq A exon
ATATTGTGCTGAATTTTCGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTCGCCCCAAAGTCCATTTGCCTCCACTACGTCACCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAATGTG
Seq C2 exon
GCTGGCTGCAGGAGCTGGCACGCAGGCTGGAGACGCCCTATTACCTGGTGAGCCGGAGTCCAGATGGAGGGAACAGCTCTGGCCAGAGTGAAAACTGCAGTAGCAGTGGCGGCGGCAGCGAAGCCAACGGGACTGGGCTGGAGCTGCTGGGTGGCCCATCCCTACGCAGCGCCTACATCACCTCCTTGTACTTCGCGCTCAGCAGTCTCACCAGTGTGGGCTTCGGCAATGTGTCCGCTAACACAGACACTGAGAAGATTTTCTCCATCTGCACCATGCTTATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.0=14.6)
A:
PF0052026=Ion_trans=FE(21.6=100)
C2:
PF0052026=Ion_trans=FE(39.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATCCGGAAGTCACCCTT
R:
CCAGGTAATAGGGCGTCTCCA
Band lengths:
248-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]