BtaEX6021137 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32717008-32718624:+
Coord C1 exon
chr5:32717008-32717062
Coord A exon
chr5:32717156-32717227
Coord C2 exon
chr5:32718202-32718624
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCCCTCACCCCCCAGTGC
3' ss Score
10.26
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
AGAATGATGGCCAGAGCTGCACGGATGCTACACCACTGCCGAAGCCACAGCAATG
Seq A exon
TGCCTCTGTCACCGCTCAGAAGCCGAGTCTCCCACCTGCACGAGGACAGCCAGGCGGTCAGGGTTTCCACGT
Seq C2 exon
GCTCGGAGCAGTCCCTGAGCACCCGGAGTCCCGCCAGCACCTGGGCTTACGTCCAGCAGCTGAAGGTCATCGACAACCAGCGGGAACTGTCCCGCCTCTCCCGGGAGCTGGAGCCGTGAGGAGGGGCTGGGCTGGAGCAGACACTGGCCACCAGGAGAGCCTGGGGCACGCCGGGCGAGGAGGCCCACGGGCTGGCCGAGCCGGGCAGGGCTCTCCAAGGACTGGACCTGAGGCCCAGGAGAGGGCAGCGTGGAGGCACCTGTCCCCCGCGATGACTGGTGGCCAAGGAGGACCTGCGAATGGAAGGAGCTGGGGCCCAAGGCCAAGGAGTGGGGGACAGAGAGGCCCTGGAGTGAGTGGGAGAGCAGAGCGTTTTCTCTCTTTGTGTTCAATAGAGAGCTCTCCACACCAGGATTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'31-35,'31-33,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.160 C2=0.231
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTACACCACTGCCGAAG
R:
AGTGTCTGCTCCAGCCCAG
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]