GgaEX1048241 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:439846-441023:+
Coord C1 exon
chrLGE22C19W28_E50C23:439846-439900
Coord A exon
chrLGE22C19W28_E50C23:439984-440055
Coord C2 exon
chrLGE22C19W28_E50C23:440706-441023
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTGTATGCCCCCAGCTC
3' ss Score
8.34
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CACATGATGGCGAAGACGGTGCGCATCCTGCAGCGCTGCCGGGGCCAGGCACACG
Seq A exon
CTCCGCTGTCCCCGCTGCGGAATCGCTCCCCACACCGACCAGAGGATGCCAGGGCCATCAGGATCAGCACAT
Seq C2 exon
GCTCGGAGCAGTCGCTGAGCGTGCGGAGCCCCGTCTCCACCTGGGCATATCTGCAGCACCTGAGAGCCATCGACAGCCAGAAGGAGCTGCTGCGGCTCTCCCGTGATCTGGAGTCCTGATGGGCAGCAGGGAAAGGGAGCGAGGACGCAGCGGGGCCGTGGCACTGCGTGTGCTGATGGCACAGCAGCCCCGTGGCTCTGCTATGGGAGCCGGACTCGGCCGTGCAGTCGGGAGCCCACGGGGGCTGTGGGAAGGTGAGGCCACAGACAGCAGGGTCTGCAGCCCCCACGCAGTGAGCAATAGAGGTATTTTTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'39-46,'39-44,40-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.640 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGATGGCGAAGACGGTG
R:
ATCAGGACTCCAGATCACGGG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]