MmuEX6056121 @ mm10
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97744770-97747277:-
Coord C1 exon
chr15:97747223-97747277
Coord A exon
chr15:97747058-97747129
Coord C2 exon
chr15:97744770-97745666
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTCTCTCTGCCCAGCGC
3' ss Score
10.67
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
CGGATGATGGCCAGAGCGGTGCGGATGCTTCACCACTGCCGAAGTCACAGTACCG
Seq A exon
CGCCTCTATCACCACTCAGAAGCCGAGTGTCCCACATCCACGAGGACAGCCAGGGATCAAGGATCTCCACGT
Seq C2 exon
GTTCTGAGCAGTCCCTGAGCACCCGGAGTCCAGCCAGCACCTGGGCTTATGTCCAGCAGCTGAAGGTCATTGACAACCAGCGGGAACTGTCCCGCCTCTCCCGGGAGCTGGAACCATGAGGAAGGACTGGCTGGAGCAGGCACTCTCTCCGAGGAAGCCAGAGCCTGTGCAACCAAGAGGTCCAGAGGCCAGCCACAGCTGGGCAGGGCTCTCCACAGAGCGGACTCAAGGCCCTGGAGTGGGCAGTGTCGGGGCAGTTGTCCCTGTGATGACTGTCAGCTATGGAGATCTTTGTTCACGGCCAAGGAAAGGGGGGACATTGAGGCCATGCCGTGGGTAGGAGAGCTGGGAGGTACAGGACTCTGGATCAGTAGAGAGCCCTCCCACCGGGCCTTCTGCGCATCTGCACGTCTGTACATCTGCATGTTTGCAAGTCTGTACGACTGTACGTGCAGCTGTACCATCCAGTGGTCGCCAGGCCTCGTGCTTGTTTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-'58-64,'58-61,59-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.231
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTTCACCACTGCCGAAG
R:
CTCCAGCCAGTCCTTCCTCAT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types