DreEX0060849 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33510901-33517524:+
Coord C1 exon
chr23:33510901-33510955
Coord A exon
chr23:33514365-33514436
Coord C2 exon
chr23:33517406-33517524
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTATTCTGTGCTTTTGCAGTGC
3' ss Score
8.61
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGCATGATTGCCAGAACAGTGAAGACAGTTCGGGATTGTCGAAGCCAACCTTACG
Seq A exon
TGCCTTCATCTCCGCAGAAAGGCTTGACGGAGAGAATGTTCTTGGATGCTCAAGCTATCCGAATATCAACAT
Seq C2 exon
ATTCAGACCAGTCTCTGAACCTCCGCAGTGCCACCAGTATCAGACAGTACATCCAGAACCTGAAAGTGATCGACAATCAGAAGAAACTAACTCAGCTCTCCAGAGCCTTAGAGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.120 C2=0.026
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATGATTGCCAGAACAGTG
R:
GCGCTCTAAGGCTCTGGAGAG
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]