RnoEX6033818 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139232251-139234543:-
Coord C1 exon
chr7:139234489-139234543
Coord A exon
chr7:139234323-139234394
Coord C2 exon
chr7:139232251-139232948
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCTCTCTGCCCAGCGC
3' ss Score
10.77
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CGAATGATGGCCAGAGCCGTGCGGATGCTCCACCACTGCCGAAGCCACAGCACCG
Seq A exon
CGCCTCTATCACCACTCAGAAGCCGGGTTTCCCACATCCACGAGGACAGCCAGGCATCAAGAATCTCCACAT
Seq C2 exon
GTTCCGAGCAGTCCCTGAGCACCCGGAGTCCAGCCAGCACCTGGGCTTATGTCCAGCAGCTGAAGGTCATTGACAACCAGCGGGAACTGTCCCGCCTCTCCCGGGAACTGGAACCATGAGGAAGGACTGGCTGGAGCAGGCACTTCTCTCAGAGAAAGCCAGAGCCTGTGCAACCAAGAGGTCCAGAGGCCAGCCACAGCTGGGCAGGGCTCTCCACAGAGCGGACTCAAGGCCCTGGAGTGGGCAGTGTCGAGGCAGCTGTCCTCTGTGATGACTGTCAGCTGTGAAGATCTTTGATGTTCACGGCCAAGGAAAAGGGGCCATTGAGGCCCCAGAGGGGTAGGAGAGCTGGGAGGTGCAGGACTCTGGTTCAGTAGAGAGCCCTCCCACCGGGCTTTCTGCATGTCTGTATGTCTGTACATGCAGCTGTGCTGTCCATGGATGCCAGGCCCTGTGCTTGTTTTCACAGGAGCCAGCGAGCTCACATCTGCATGGGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'43-52,'43-51,44-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.231
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCCACCACTGCCGAA
R:
CTCCAGCCAGTCCTTCCTCAT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]