BtaEX6022448 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57878763-57880389:+
Coord C1 exon
chr5:57878763-57878890
Coord A exon
chr5:57878991-57879070
Coord C2 exon
chr5:57880134-57880389
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCCCAGTGTCCTGCCACCAGCTG
3' ss Score
5.48
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GCTGCTGGTGGGCGCTCCTCAGGCTCTGGCCCTGCCAGGGCAGCAGGCAAATCGCACTGGAGGTCTCTTCGCTTGCCCCCTGAGCCTGGAAGAGACTGACTGCTACAGAGTGGACATCGACCAGGGAG
Seq A exon
CTGATGTGCAGAAGGAGAGTAAGGAGAACCAGTGGTTGGGAGTCAGTGTTCGGAGCCAGGGGCCTGGGGGCAAGATTGTT
Seq C2 exon
ACCTGTGCACACCGATACGAGGCGCGGCAGCGTGTAGACCAGATCCTGGAGACGAGGGATGTGATCGGCCGCTGCTTTGTTCTCAGCCAGGACCTGGCCATCCGAGATGAGCTGGATGGTGGGGAGTGGAAGTTCTGTGAGGGACGCCCCCAGGGCCACGAACAGTTCGGCTTCTGCCAGCAGGGCACGGCGGCTGCCTTCTCCCCTGACAGCCACTATCTCCTCTTTGGGGCCCCAGGAACCTATAACTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897-'7-5,'7-3,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCCTGGAAGAGACTGA
R:
ACCATCCAGCTCATCTCGGAT
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]