MmuEX6052345 @ mm10
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128939040-128940937:+
Coord C1 exon
chr10:128939040-128939167
Coord A exon
chr10:128939268-128939347
Coord C2 exon
chr10:128940682-128940937
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCCCAGTGTCTTTGCCTCAGCTA
3' ss Score
5.21
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GCTGCTGGTGGGCGCTCCCCAGGCCCTGGCTCTTCCTGGACAGCAGGCAAACCGCACCGGAGGCCTCTTTGCTTGTCCCCTGAGCCTAGAGGAGACAGATTGCTACAGAGTGGACATTGACAGGGGAG
Seq A exon
CTAACGTGCAGAAGGAGAGCAAGGAGAACCAATGGCTGGGAGTCAGTGTCCGGAGCCAGGGGCCAGGGGGCAAGATTGTT
Seq C2 exon
ACGTGTGCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGCTTTGGAGACTCGGGATGTGATTGGCCGCTGCTTTGTGCTAAGCCAGGACCTGGCCATCCGTGATGAGCTGGATGGTGGGGAGTGGAAGTTCTGTGAGGGGCGCCCCCAGGGCCATGAACAGTTTGGGTTCTGTCAGCAGGGCACAGCTGCCACCTTCTCCCCTGACAGTCACTACCTCGTCTTTGGGGCTCCAGGAACCTATAACTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-'7-7,'7-5,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGCTTGTCCCCTGAGC
R:
CATCCAGCTCATCACGGATGG
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types