GgaEX1030702 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17233126-17235651:-
Coord C1 exon
chr7:17235524-17235651
Coord A exon
chr7:17235206-17235285
Coord C2 exon
chr7:17233126-17233381
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCCGTTGTAATGCTTTGCAGCTG
3' ss Score
8.64
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTGCTGGTTGGAGCTCCTCGGGAAAAGGCCTTTCCATCCCAACAAGCCAACAGAACGGGAGGGCTGTACAGCTGTGACATCACATCTTCAGATACGCGCTGCACGCGTGTTGTGTTTGATGAAGACA
Seq A exon
CTGACCCAAAGATGGAGAGCAAAGAAGACCAATGGATGGGTGTAACTGTCCAAAGTCAGGGGCCAGGAGGAAACGTGGTG
Seq C2 exon
ACATGTGCACATCGCTATGAGAAAAGGCAATATGTAAACACAGTGCAGGAAACCCGGGATATCATTGGAAGGTGCTACGTGCTGAGCCAGGATCTCACTATTAAGGATGATATGGATAATGGAGTATGGAGTTTTTGTGATGGCCGCTTAAGAGGCCATGAGAAGTTTGGTTCCTGTCAGCAAGGTGTTGCTGCTACTTTTACTAGAGACTATCATTACATTGTGTTTGGTGCCCCAGGCACTTACAATTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.593 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCCAACAGAACGGGAG
R:
GCACGTAGCACCTTCCAATGA
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]