DreEX6032004 @ danRer10
Exon Skipping
Gene
ENSDARG00000069946 | itga6b
Description
integrin, alpha 6b [Source:ZFIN;Acc:ZDB-GENE-050320-5]
Coordinates
chr1:30230288-30232846:+
Coord C1 exon
chr1:30230288-30230415
Coord A exon
chr1:30230492-30230571
Coord C2 exon
chr1:30232585-30232846
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGAAACTTTGTGCTTTTAGAAA
3' ss Score
6.82
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTTGCTTGTTGGTTCCCCAAAGGCAAAAGCATTGCCCAATCAGAGGTCAAAAATTACAGGAGGCTTGTACAACTGTGACATAAACATTCCTGGTCAGTCATGCCAGCGAGTAATGTTTGACAATGAAG
Seq A exon
AAAACCTGCAGACTGAAAATAAAGAGAACCAGTGGATGGGAGTTACTGTACAGAGCCAGGGTCCTGGTGGAAAGATATTG
Seq C2 exon
GTCTGTGCACATCGATACCAGCGGCGCTTATTTGTTGGCTCAGTTCAGGAACTGCGTGACTTGACAGGTCGGTGCTATGTACTTAGTGAGGATGTGACGATTAATGAGATCTCAGATGAAGATGGAGGGGATTGGATGTTCTGCAATGGGAGAAACAGAGGGCACGAGCGGTTTGGATCATGCCAGCAGGGCATGTCCGCCACATTCACAAAGGACTATCACTATCTGGTGTTTGGAGCACCAGGCGCTTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069946-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.370 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCCCAATCAGAGGTCA
R:
TAGCACCGACCTGTCAAGTCA
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]