RnoEX6017406 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58476130-58479672:+
Coord C1 exon
chr3:58476130-58476254
Coord A exon
chr3:58477970-58478049
Coord C2 exon
chr3:58479417-58479672
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTACCCATGTTCTTCCACAGCTG
3' ss Score
10.07
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTGCTTGTGGGGGCACCTCGGGCAGAAGCACTTCCCCTGCAGAAGGCGAACAGAACAGGGGGCCTGTACAGCTGTGACATCACCTCCCGGGGACCTTGCACACGAATTGTATTTGATAATGATG
Seq A exon
CTGATCCTATGTCAGAAAGCAAGGAAGACCAGTGGATGGGAGTCACTGTCCAGAGTCAAGGTCCAGGGGGCAAAGTGGTG
Seq C2 exon
ACGTGTGCGCATCGATACGAGAAACGGCAGCACGTTAACACGAAGCAGGAGTCCCGGGACATCTTCGGAAGGTGTTACGTCCTGAGTCAGAATCTCAGAATTGAAGATGATATGGATGGAGGAGACTGGAGTTTCTGTGATGGCCGATTGAGGGGCCATGAAAAATTTGGCTCTTGTCAGCAAGGAGTAGCGGCTACTTTCACTAAAGACTTTCATTACATTGTTTTTGGAGCCCCAGGGACTTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518-'6-2,'6-1,9-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.407 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCGAACAGAACAGGG
R:
TCAGGACGTAACACCTTCCGA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]