MmuEX0024619 @ mm9
Exon Skipping
Gene
ENSMUSG00000027111 | Itga6
Description
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
Coordinates
chr2:71654687-71658311:+
Coord C1 exon
chr2:71654687-71654811
Coord A exon
chr2:71656538-71656617
Coord C2 exon
chr2:71658056-71658311
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTACCCATGTTCTTCTGCAGCTG
3' ss Score
10.05
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTGCTTGTGGGGGCACCTCGGGCAGAAGCACTCCCGCTGCAGAGGGCGAACAGAACAGGGGGCCTGTACAGCTGTGACATCACCTCCCGGGGACCTTGTACACGGATTGAATTTGATAATGACG
Seq A exon
CTGATCCTATGTCAGAAAGCAAGGAAGACCAGTGGATGGGAGTCACTGTTCAGAGCCAAGGTCCAGGGGGCAAAGTGGTG
Seq C2 exon
ACGTGTGCACATCGATATGAGAAACGGCAGCACGTCAACACGAAGCAGGAGTCGCGGGATATCTTTGGAAGATGTTATGTCCTAAGTCAGAATCTCAGAATTGAAGATGATATGGACGGAGGAGACTGGAGTTTCTGCGATGGCCGGTTGAGAGGCCATGAAAAGTTTGGCTCCTGTCAGCAAGGAGTAGCGGCTACTTTCACTAAGGACTTTCATTACATTGTTTTTGGAGCCCCAGGGACTTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027111-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.556 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCTTGTACACGGATTGA
R:
AAACTCCAGTCTCCTCCGTCC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: